Articles

    2020

  1. Alex Di Genova, Elena Buena-Atienza, Stephan Ossowski, and Marie-France Sagot. Efficient hybrid de novo assembly of human genomes with WENGAN. Nature Biotechnology (2020)
  2. Scheila G. Mucha, Mariana G. Ferrarini, Carol Moraga, Alex Di Genova, Laurent Guyon, Florence Tardy, Sophie Rome, Marie-France Sagot & Arnaldo Zaha. Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells. Scientific Reports (2020)
  3. Claudia Muñoz-Espinoza, Alex Di Genova, Alicia Sánchez, José Correa, Alonso Espinoza, Claudio Meneses, Alejandro Maass, Ariel Orellana and Patricio Hinrichsen. Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches. BMC Plant Biology (2020)
  4. Juliana Cardinali Rezendea, Alex Di Genova, Rafael et al. The relevance of enzyme specificity for coenzymes and the presence of 6-phosphogluconate dehydrogenase for polyhydroxyalkanoates production in the metabolism of Pseudomonas sp. LFM046. International Journal of Biological Macromolecules (2020)
  5. Verdugo, Ricardo A; Di Genova, Alex; Herrera, Luisa; Moraga, Mauricio; Acuña, Mónica; Berríos, Soledad; Llop, et al. Development of a small panel of SNPs to infer ancestry in Chileans that distinguishes Aymara and Mapuche components. Biological research (2020)

    6. 2019

  6. A Di Genova, E Buena-Atienza, S Ossowski, MF Sagot. Wengan: Efficient and high quality hybrid de novo assembly of human genomes. bioRxiv (2019)
  7. Travisany, Dante; Ayala-Raso, Anibal; Di Genova, Alex; Monsalve, Liliam; Bernales, Maricarmen; Martínez, Juan Pablo; González-Agüero, Mauricio; Defilippi, Bruno; Cherian, Sam; Maass, Alejandro; Fuentes, Lida. RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus Heritage) revealed several candidate genes involved in fruit development and ripening. Scientia Horticulturae (2019)
  8. Elena A. Vidal, Tomás C. Moyano, Bernabé I. Bustos, Eduardo Pérez-Palma, Carol Moraga, Eleodoro Riveras, Alejandro Montecinos, Lorena Azócar, Daniela C. Soto, Mabel Vidal, Alex Di Genova, Klaus Puschel, Peter Nürnberg, et al.. Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans. Scientific Reports (2019)

    9. 2018

  9. López, M. E., Benestan, L. , Moore, J. , Perrier, C. , Gilbey, J. , Di Genova, A. , Maass, A. , Diaz, D. , Lhorente, J. P., Correa, K. , Neira, R. , Bernatchez, L. and Yáñez, J. M., Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L) populations with different geographical origins. Evol Appl. (2018)
  10. S. Narum, A. Di Genova, S. Micheletti, A. Maass, Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon. Proceedings B,18 July 2018
  11. Di Genova, A., Ruz, Gonzalo., Sagot, Marie-France., Maass, Alejandro; Fast-SG: an alignment-free algorithm for hybrid assembly, GigaScience, Volume 7, Issue 5, 1 May 2018, giy048
  12. Di Genova, A., Mardones, W., , Cortés Marı́a Paz, Travisany, D., Maass, A., & Eyzaguirre, J. (2018). The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes. Mycology, 1–11.

    13. 2017

  13. Pastenes, L., Valdivieso, C., Di Genova, A., Travisany, D., Hart, A., Montecino Martı́n, … others. (2017). Global gene expression analysis provides insight into local adaptation to geothermal streams in tadpoles of the Andean toad Rhinella spinulosa. Scientific Reports, 7.
  14. Loira, N., Mendoza, S., Cortés Marı́a Paz, Rojas, N., Travisany, D., Di Genova, A., … Maass, A. (2017). Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production. BMC Systems Biology, 11(1), 66.

    15. 2016

  15. Yáñez, J. M., Naswa, S., López, M. E., Bassini, L., Correa, K., Gilbey, J., … others. (2016). Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations. Molecular Ecology Resources, 16(4), 1002–1011.
  16. Correa, K., Lhorente, J. P., Bassini, L., López Marı́a E, Di Genova, A., Maass, A., … Yáñez, J. M. (2016). Genome wide association study for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L.) using a 50K SNP genotyping array. Aquaculture.
  17. Lien, S., Koop, B. F., Sandve, S. R., Miller, J. R., Kent, M. P., Nome, T., … others. (2016). The Atlantic salmon genome provides insights into rediploidization. Nature, 533(7602), 200–205.
  18. Muñoz-Espinoza, C., Di Genova, A., Correa, J., Silva, R., Maass, A., González-Agüero, M., … Hinrichsen, P. (2016). Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight. BMC Plant Biology, 16(1), 104.
  19. Latorre, M., Cortés Marı́a Paz, Travisany, D., Di Genova, A., Budinich, M., Reyes-Jara, A., … others. (2016). The bioleaching potential of a bacterial consortium. Bioresource Technology, 218, 659–666.

    20. 2015

  20. Smedley, D., Haider, S., Durinck, S., Pandini, L., Provero, P., Allen, J., … others. (2015). The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research, 43(W1), W589–W598.
  21. Correa, K., Lhorente, J. P., López Marı́a E, Bassini, L., Naswa, S., Deeb, N., … Yáñez, J. M. (2015). Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes. BMC Genomics, 16(1), 854.
  22. Arismendi Marı́a José, Almada, R., Pimentel, P., Bastias, A., Salvatierra, A., Rojas, P., … others. (2015). Transcriptome sequencing of Prunus sp. rootstocks roots to identify candidate genes involved in the response to root hypoxia. Tree Genetics & Genomes, 11(1), 11.

    23. 2014

  23. Di Genova, A., Almeida, A. M., Muñoz-Espinoza, C., Vizoso, P., Travisany, D., Moraga, C., … Maass, A. (2014). Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants. BMC Plant Biology, 14(1), 7.
  24. Travisany, D., Cortés Marı́a Paz, Latorre, M., Di Genova, A., Budinich, M., Bobadilla-Fazzini, R. A., … Maass, A. (2014). A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment. Research in Microbiology, 165(9), 743–752.

    25. 2013

  25. Bórquez, D. A., Olmos, C., Álvarez, S., Di Genova, A., Maass, A., & González-Billault, C. (2013). Bioinformatic survey for new physiological substrates of Cyclin-dependent kinase 5. Genomics, 101(4), 221–228.
  26. Utreras, E., Henriquez, D., Contreras-Vallejos, E., Olmos, C., Di Genova, A., Maass, A., … Gonzalez-Billault, C. (2013). Cdk5 regulates Rap1 activity. Neurochemistry International, 62(6), 848–853.
  27. Sharma, S. K., Bolser, D., de Boer, J., Sønderkær, M., Amoros, W., Carboni, M. F., … others. (2013). Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3: Genes, Genomes, Genetics, 3(11), 2031–2047.
  28. González-Agüero, M., Garcı́a-Rojas Miguel, Di Genova, A., Correa, J., Maass, A., Orellana, A., & Hinrichsen, P. (2013). Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry and related tissues derived from RNA-Seq data. BMC Genomics, 14(1), 878.

    29. 2012

  29. Hödar, C., Moreno, P., Di Genova, A., Latorre, M., Reyes-Jara, A., Maass, A., … Cambiazo, V. (2012). Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators. BioMetals, 25(1), 75–93.
  30. Travisany, D., Di Genova, A., Sepúlveda, A., Bobadilla-Fazzini, R. A., Parada, P., & Maass, A. (2012). Draft genome sequence of the Sulfobacillus thermosulfidooxidans Cutipay strain, an indigenous bacterium isolated from a naturally extreme mining environment in Northern Chile. Journal of Bacteriology, 194(22), 6327–6328.

    31. 2011

  31. Guberman, J. M., Ai, J., Arnaiz, O., Baran, J., Blake, A., Baldock, R., … others. (2011). BioMart Central Portal: an open database network for the biological community. Database, 2011, bar041.
  32. Di Genova, A., Aravena, A., Zapata, L., Gonzalez, M., Maass, A., & Iturra, P. (2011). SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. Database, 2011, bar050.
  33. Consortium, P. G. S., & others. (2011). Genome sequence and analysis of the tuber crop potato. Nature, 475(7355), 189–195.

Submitted articles and Preprints

2018

  1. A. Di Genova, R.A. Verdugo, L. Herrera, M. Moraga, M. Acuña, S. Berríos, E. Llop, C. Valenzuela, M.L. Bustamante, D. Digman, A. Symon, S. Asenjo, P. Pezo-Valderrana, P. López, A. Blanco, J. Suazo, F. Caba, E. Barozet, M. Villalón, S. Alvarado, D. Cáceres, K. Salgado, P. Portales, A.M. Naranjo, A. Moreno-Estrada, C.R. Gignoux, C.D. Bustamante, C. Eng, S. Huntsman, E.G. Burchard, N. Loira, A. Maass, L. Cifuentes. Whole-genome sequencing reveals large diversity in the Amerindian components of modern Chileans ChileGenomico Project.
  2. The center for genome regulation [CRG-Chile] (2018). Whole genome sequence of Mapuche-Huilliche Native Americans. bioRxiv. Cold Spring Harbor Laboratory.
  3. D. Díaz, M.E López, A. Di Genova, M. Latorre, J.M Yáñez, A. Maass. Characterization of Runs of Homozygosity in farmed Atlantic salmon from European and North American origin.

2017

  1. Eyzaguirre, J., Mardones, W., Di Genova, A., Cortes, M. P., Travisany, D., & Maass, A. (2017). The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes. bioRxiv. Cold Spring Harbor Laboratory.
  2. Di Genova, A., Ruz, G. A., Sagot, M.-F., & Maass, A. (2017). FAST-SG: An alignment-free algorithm for hybrid assembly. bioRxiv. Cold Spring Harbor Laboratory.

International Conferences

2017

  1. Correa, K., Lhorente, J. P., Lopez, M. E., Figueroa, R., Bassini, L., Di Genova, A., … Yanez, J. M. (2017). GENOME WIDE ASSOCIATION ANALYSIS REVEALS GENETIC ARCHITECTURE OF THE RESISTANCE TO Piscirickettsia Salmonis IN ATLANTIC SALMON (Salmo salar L.). In AQUACULTURE (Vol. 472, pp. 157–157). ELSEVIER SCIENCE BV PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS.
  2. Yanez, J. M., Correa, K., Lopez, M. E., Lhorente, J. P., Figueroa, R., Bassini, L., … Maass, A. (2017). EXTENT OF GENOME-WIDE LINKAGE DISEQUILIBRIUM IN FARMED ATLANTIC SALMON (Salmo salar L.) USING HIGHDENSITY GENOTYPES. In AQUACULTURE (Vol. 472, pp. 103–103). ELSEVIER SCIENCE BV PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS.
  3. Correa, K., Lhorente, J. P., Lopez, M. E., Figuera, R., Bassini, L., Di Genova, A., … Yanez, J. M. (2017). GENOME WIDE ASSOCIATION ANALYSIS FOR RESISTANCE TO Caligus rogercresseyi IN ATLANTIC SALMON (Salmo salar L.). In AQUACULTURE (Vol. 472, pp. 156–157). ELSEVIER SCIENCE BV PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS.
  4. Lopez, M. E., Correa, K., Di Genova, A., Moore, J. S., Perrier, C., Bernatchez, L., … others. (2017). IDENTIFYING PARALLEL AND NON-PARALLEL GENOMIC CHANGES BETWEEN INDEPENDENT PAIRS OF WILD/DOMESTIC ATLANTIC SALMON POPULATIONS USING A HIGH DENSITY SNP ARRAY. In AQUACULTURE (Vol. 472, pp. 94–94). ELSEVIER SCIENCE BV PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS.
  5. Lam, N., Cordova, V., Ulloa, P., Araneda, C., Di Genova, A., Maass, A., & Iturra, P. (2017). RESPONSE OF GENES INVOLVED IN LIPID METABOLISM OF ATLANTIC SALMON FAMILIES FED TO PARTIAL PLANT OIL-DIET. In AQUACULTURE (Vol. 472, pp. 149–150). ELSEVIER SCIENCE BV PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS.

2010

  1. Maass, A., Orellana, A., Hinrichsen, P., Aravena, A., Muñoz, C., & Di Genova, A. (2010). Vitis vinifera genome annotation improvement using next-generation sequencing technologies and NCBI public data. In X International Conference on Grapevine Breeding and Genetics 1046 (pp. 349–356).

Additional information

My publication record is available in GoogleScolar and ResearchGate.